PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000999m
Common NameEUTSA_v10000999mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 264aa    MW: 30146.5 Da    PI: 4.4645
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000999mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.39.1e-2113100196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+   + ++s  +++p +f e+ + +   ++t++l+ + g  W+v +  +k ++r ++t+GW++F+++++Lk g+f++F +dg ++f   v
  Thhalv10000999m  13 FFKVF--LSETASESMSIPVSFSEHLEDP--LPQTVKLQGTGGGIWTVSF--KKIRQRAYFTAGWSKFAEDHDLKNGEFLTFVYDGYNTF--EV 98 
                      88999..666777779******9665655..889****************..********************************998888..55 PP

                      EE CS
               B3  95 kv 96 
                      +v
  Thhalv10000999m  99 SV 100
                      54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.35E-2011102No hitNo description
SuperFamilySSF1019363.34E-2311103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.12811104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-2311102IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.7E-2313104IPR003340B3 DNA binding domain
PfamPF023621.8E-1713100IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-9165249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-5165250IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAETDNDVVL PRFFKVFLSE TASESMSIPV SFSEHLEDPL PQTVKLQGTG GGIWTVSFKK  60
IRQRAYFTAG WSKFAEDHDL KNGEFLTFVY DGYNTFEVSV YNRWGSKETR AVKETVEISD  120
TESEEEEEAV ADSDYEEEEE DPLVDGGEDT ESDDAGISQS EVTSMSMTNP YFTTGLKNRI  180
YELLIPAEVV KDMGFRFGES IKYVDEEGTM VGERGKWADD RICFKGWDRI CRRNRLRVQD  240
KVNCEMLHHR KLVHSIKIHI TRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A6e-19121011099At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398097.10.0hypothetical protein EUTSA_v10000999mg
SwissprotQ8LAV51e-101REM20_ARATH; B3 domain-containing protein REM20
TrEMBLV4KNU70.0V4KNU7_EUTSA; Uncharacterized protein
STRINGBra003130.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.17e-95B3 family protein